Pediatric endocrinology

Genomic Insights into Short Stature in Children Born Small for Gestational Age: A Korean Multicenter Exome Study

J Clin Endocrinol MetabPublished Multicenter exome sequencing study

Authors' conclusion

SGA-SS has a heterogeneous genetic basis, with CNVs significantly contributing. The variable presentation of 22q11.2 microdeletion syndrome highlights its relevance. A genetic diagnosis is more likely in familial cases or those with ID/DD, supporting the utility of genetic testing.

Study context

Population
Children born small for gestational age (SGA) with short stature due to failure of catch-up growth (SGA with short stature (SGA-SS)), 7 hospitals in South Korea
Participants
191 children
Outcome
Genetic causes of SGA-SS (diagnostic rate of whole-exome sequencing)
Methodological detailsmulticentre, whole-exome sequencing, copy number variants (CNVs) confirmed by chromosomal microarray
  • Multicentre
  • Whole-exome sequencing
  • CNVs confirmed by chromosomal microarray

Main finding

As reported in the abstract

Diagnostic yield

Children with genetic variants identified

34

17.8% diagnostic rate

CNVs among diagnosed

50%

17/34

22q11.2 microdeletion syndrome, mostly mild dysmorphic features without severe intellectual disability (ID), developmental delay (DD) or severe anomalies

6 children

Single-nucleotide variants (SNVs) among diagnosed

17 children

17/34, 50%

Further findings

Genetic causes in patients with ID/DD

Genetic causes identified in patients with ID/DD
14 (58.3%) of 24
CNVs among them
9
SNVs among them
5

SNV types

Compound heterozygous SLC26A2 mutations (1 likely pathogenic, 1 of uncertain significance)
1 child
Heterozygous pathogenic variants (COL2A1, ACAN, SALL1, TAOK1, ANKRD11)
5
Heterozygous likely pathogenic variants (PIK3R1, PLAG1, SCUBE3, COL9A2 ×2, SMAD4, PTPN11 ×2, CDKN1C, ACAN, NF1)
11
Novel familial Silver-Russell syndrome case linked to CDKN1C mutation

Original publication

Genomic Insights into Short Stature in Children Born Small for Gestational Age: A Korean Multicenter Exome Study. J Clin Endocrinol Metab. Published 26 September 2025. doi:10.1210/clinem/dgaf533

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